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Fall 2019 EEOB/BCB 546X Schedule

We will update this page before every class with the slides and links to in-class materials. To view the planned schedule of course activities, view the class calendar using the button below.

Accessing Data and Class Files

All of the files used for in-class activities and assignments are published online in a public GitHub repository. It is expected that you will pull any new changes to this repository at the beginning of class. This will enable you to access new data files and scripts needed for in-class activities.

The 2019 repository can be found at: https://github.com/EEOB-BioData/BCB546X-Fall2019.

You will also need to access the files associated with the course textbook Bioinformatics Data Skills by Vince Buffalo. This repostitory can be found here: https://github.com/vsbuffalo/bds-files.

In Class Activities

Current Week

December 4-6

Previous Weeks

August 28-30

September 4-6

  • Lecture 3: Introduction to version control using Git [slides]
  • Lecture 4: More fun with Git [slides]

September 11-13

September 18-20

September 25-27

  • Lecture 9: Buffalo Chapter 7 (cont.): Advanced UNIX [slides] [pdf of slides]
  • Lecture 10: Introduction to R and RStudio and R Markdown. [link]

October 2-4

  • Lecture 11: Data structures [link]
  • Lecture 12: Data subsetting and data import [link]

October 9-11

  • Lecture 13: Data transformation [link]
  • Lecture 14: Data visualization [link]

October 16-18

  • Lecture 15: Genomic Ranges [slides]

October 23-25

October 30-November 1 (Joëlle Barido-Sottani)

November 6-8

November 13-15

November 20-22

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